NissirosV1, Main, Exploration, bibRecord, 000035

Nuclear and mitochondrial phylogenetic analysis of big‐scale sand smelt Atherina boyeri complex in Greece

Identifieur interne : 000035 ( Main/Exploration ); précédent : 000034; suivant : 000036

Nuclear and mitochondrial phylogenetic analysis of big‐scale sand smelt Atherina boyeri complex in Greece

Auteurs : S. Kraitsek [Grèce] ; E. Klossa-Kilia [Grèce] ; G. Kilias [Grèce]

Source :

Journal of Fish Biology [ 0022-1112 ] ; 2012-10.

RBID : ISTEX:689E2E59FEC96D142FC176233C98A79CCE3D06BA

Descripteurs français

Wicri :
- topic : Biologie.

English descriptors

Abstract

Genetic differentiation and phylogenetic relationships of big‐scale sand smelt Atherina boyeri specimens from 23 sampling sites in Greece and one from a lake in Turkey were investigated. A total of 2180 base pairs (bp) corresponding to the partial sequence of the mitochondrial gene cytochrome oxidase I (coI), cytochrome b (cytb) and control region, as well as of the nuclear protein‐coding gene rhodopsin (rh), were determined for the 143 specimens studied. Phylogenetic analysis of each gene segment separately and of the combined dataset revealed the existence of three different and well divergent lineages in Greece. The first corresponds to the lagoon form, in which a clear distinction between the Aegean and Ionian Sea was observed. The other two correspond to the punctuated and non‐punctuated marine forms that have been previously reported. The fact that in the present study a population without black spots on the flanks is clustered with the punctuated form and vice versa, however, suggests that differences in colour pattern do not seem to be a sufficient marker to discriminate the two marine forms. In contrast, the presence of a different length insertion between transfer RNA (tRNA) glutamic acid (tRNAglu) and cytb genes in the lagoon and in one of the two forms of marine populations, and its absence from the rest marine‐form specimens confirms that this character is conserved and capable to be used for distinguishing the different forms. Even though the divergence values among the different forms were high, their phylogenetic relationships were not able to be resolved.

Url:

https://api.istex.fr/document/689E2E59FEC96D142FC176233C98A79CCE3D06BA/fulltext/pdf

DOI: 10.1111/j.1095-8649.2012.03404.x

Affiliations:

Grèce

Links toward previous steps (curation, corpus...)

to stream Istex, to step Corpus: 000504
to stream Istex, to step Curation: 000504
to stream Istex, to step Checkpoint: 000012
to stream Main, to step Merge: 000035
to stream Main, to step Curation: 000035

Le document en format XML

<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title xml:lang="en">Nuclear and mitochondrial phylogenetic analysis of big‐scale sand smelt Atherina boyeri complex in Greece</title>
<author><name sortKey="Kraitsek, S" sort="Kraitsek, S" uniqKey="Kraitsek S" first="S." last="Kraitsek">S. Kraitsek</name>
</author>
<author><name sortKey="Klossa Ilia, E" sort="Klossa Ilia, E" uniqKey="Klossa Ilia E" first="E." last="Klossa-Kilia">E. Klossa-Kilia</name>
</author>
<author><name sortKey="Kilias, G" sort="Kilias, G" uniqKey="Kilias G" first="G." last="Kilias">G. Kilias</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">ISTEX</idno>
<idno type="RBID">ISTEX:689E2E59FEC96D142FC176233C98A79CCE3D06BA</idno>
<date when="2012" year="2012">2012</date>
<idno type="doi">10.1111/j.1095-8649.2012.03404.x</idno>
<idno type="url">https://api.istex.fr/document/689E2E59FEC96D142FC176233C98A79CCE3D06BA/fulltext/pdf</idno>
<idno type="wicri:Area/Istex/Corpus">000504</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">000504</idno>
<idno type="wicri:Area/Istex/Curation">000504</idno>
<idno type="wicri:Area/Istex/Checkpoint">000012</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Checkpoint">000012</idno>
<idno type="wicri:doubleKey">0022-1112:2012:Kraitsek S:nuclear:and:mitochondrial</idno>
<idno type="wicri:Area/Main/Merge">000035</idno>
<idno type="wicri:Area/Main/Curation">000035</idno>
<idno type="wicri:Area/Main/Exploration">000035</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title level="a" type="main">Nuclear and mitochondrial phylogenetic analysis of big‐scale sand smelt <hi rend="italic">Atherina boyeri</hi>
 complex in Greece</title>
<author><name sortKey="Kraitsek, S" sort="Kraitsek, S" uniqKey="Kraitsek S" first="S." last="Kraitsek">S. Kraitsek</name>
<affiliation wicri:level="1"><country xml:lang="fr">Grèce</country>
<wicri:regionArea>Department of Biology, Division of Genetics, Cell Biology and Development, University of Patras, Patras 26500</wicri:regionArea>
<wicri:noRegion>Patras 26500</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Klossa Ilia, E" sort="Klossa Ilia, E" uniqKey="Klossa Ilia E" first="E." last="Klossa-Kilia">E. Klossa-Kilia</name>
<affiliation wicri:level="1"><country xml:lang="fr">Grèce</country>
<wicri:regionArea>Department of Biology, Division of Animal Zoology, University of Patras, Patras 26500</wicri:regionArea>
<wicri:noRegion>Patras 26500</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Kilias, G" sort="Kilias, G" uniqKey="Kilias G" first="G." last="Kilias">G. Kilias</name>
<affiliation wicri:level="1"><country xml:lang="fr">Grèce</country>
<wicri:regionArea>Department of Biology, Division of Genetics, Cell Biology and Development, University of Patras, Patras 26500</wicri:regionArea>
<wicri:noRegion>Patras 26500</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><country wicri:rule="url">Grèce</country>
</affiliation>
</author>
</analytic>
<monogr></monogr>
<series><title level="j" type="main">Journal of Fish Biology</title>
<title level="j" type="alt">JOURNAL OF FISH BIOLOGY</title>
<idno type="ISSN">0022-1112</idno>
<idno type="eISSN">1095-8649</idno>
<imprint><biblScope unit="vol">81</biblScope>
<biblScope unit="issue">5</biblScope>
<biblScope unit="page" from="1559">1559</biblScope>
<biblScope unit="page" to="1577">1577</biblScope>
<biblScope unit="page-count">19</biblScope>
<publisher>Blackwell Publishing Ltd</publisher>
<pubPlace>Oxford, UK</pubPlace>
<date type="published" when="2012-10">2012-10</date>
</imprint>
<idno type="ISSN">0022-1112</idno>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt><idno type="ISSN">0022-1112</idno>
</seriesStmt>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Accession</term>
<term>Accession numbers</term>
<term>Amvrakikos</term>
<term>Anks</term>
<term>Atherina</term>
<term>Atherina boyeri</term>
<term>Atherina boyeri populations</term>
<term>Atherina boyeri risso</term>
<term>Atherinidae</term>
<term>Authors journal</term>
<term>Bayesian</term>
<term>Bayesian inference</term>
<term>Biology</term>
<term>Black spots</term>
<term>Boyeri</term>
<term>Boyeri forms</term>
<term>Boyeri populations</term>
<term>Boyeri specimens</term>
<term>British isles</term>
<term>Clade</term>
<term>Coding region</term>
<term>Concatenated dataset</term>
<term>Congiu</term>
<term>Control region</term>
<term>Cytb</term>
<term>Cytochrome</term>
<term>Cytochrome oxidase</term>
<term>Danio</term>
<term>Dataset</term>
<term>Different forms</term>
<term>Different species</term>
<term>Divergence</term>
<term>Eastern mediterranean</term>
<term>Evvoia</term>
<term>Fish biology</term>
<term>Fisheries society</term>
<term>Fishery</term>
<term>Genbank</term>
<term>Genbank accession numbers</term>
<term>Genetic divergence</term>
<term>Genus atherina</term>
<term>Haplotype</term>
<term>Insertion</term>
<term>Intergenic</term>
<term>Intergenic spacer</term>
<term>Ionian</term>
<term>Kimura model</term>
<term>Kraitsek</term>
<term>Lagoon form</term>
<term>Lagoon populations</term>
<term>Lagoon specimens</term>
<term>Lake iznik</term>
<term>Marine form</term>
<term>Marine forms</term>
<term>Marine lagoon</term>
<term>Marine populations</term>
<term>Maximum parsimony</term>
<term>Menidia</term>
<term>Menidia menidia danio rerio</term>
<term>Milana</term>
<term>Mitochondrial</term>
<term>Molecular biology</term>
<term>Molecular evolution</term>
<term>Molecular phylogenetics</term>
<term>Moudania</term>
<term>Mtdna</term>
<term>Mtdna genes</term>
<term>Mtdna segments</term>
<term>Nuclear gene</term>
<term>Phylogenetic</term>
<term>Phylogenetic analysis</term>
<term>Phylogenetic relationships</term>
<term>Present study</term>
<term>Preveza</term>
<term>Previous studies</term>
<term>Rflp</term>
<term>Rflp analysis</term>
<term>Rhodopsin</term>
<term>Sampling sites</term>
<term>Second marine form</term>
<term>Sequence analysis</term>
<term>Support values</term>
<term>Trabelsi</term>
</keywords>
<keywords scheme="Teeft" xml:lang="en"><term>Accession</term>
<term>Accession numbers</term>
<term>Amvrakikos</term>
<term>Anks</term>
<term>Atherina</term>
<term>Atherina boyeri</term>
<term>Atherina boyeri populations</term>
<term>Atherina boyeri risso</term>
<term>Atherinidae</term>
<term>Authors journal</term>
<term>Bayesian</term>
<term>Bayesian inference</term>
<term>Biology</term>
<term>Black spots</term>
<term>Boyeri</term>
<term>Boyeri forms</term>
<term>Boyeri populations</term>
<term>Boyeri specimens</term>
<term>British isles</term>
<term>Clade</term>
<term>Coding region</term>
<term>Concatenated dataset</term>
<term>Congiu</term>
<term>Control region</term>
<term>Cytb</term>
<term>Cytochrome</term>
<term>Cytochrome oxidase</term>
<term>Danio</term>
<term>Dataset</term>
<term>Different forms</term>
<term>Different species</term>
<term>Divergence</term>
<term>Eastern mediterranean</term>
<term>Evvoia</term>
<term>Fish biology</term>
<term>Fisheries society</term>
<term>Fishery</term>
<term>Genbank</term>
<term>Genbank accession numbers</term>
<term>Genetic divergence</term>
<term>Genus atherina</term>
<term>Haplotype</term>
<term>Insertion</term>
<term>Intergenic</term>
<term>Intergenic spacer</term>
<term>Ionian</term>
<term>Kimura model</term>
<term>Kraitsek</term>
<term>Lagoon form</term>
<term>Lagoon populations</term>
<term>Lagoon specimens</term>
<term>Lake iznik</term>
<term>Marine form</term>
<term>Marine forms</term>
<term>Marine lagoon</term>
<term>Marine populations</term>
<term>Maximum parsimony</term>
<term>Menidia</term>
<term>Menidia menidia danio rerio</term>
<term>Milana</term>
<term>Mitochondrial</term>
<term>Molecular biology</term>
<term>Molecular evolution</term>
<term>Molecular phylogenetics</term>
<term>Moudania</term>
<term>Mtdna</term>
<term>Mtdna genes</term>
<term>Mtdna segments</term>
<term>Nuclear gene</term>
<term>Phylogenetic</term>
<term>Phylogenetic analysis</term>
<term>Phylogenetic relationships</term>
<term>Present study</term>
<term>Preveza</term>
<term>Previous studies</term>
<term>Rflp</term>
<term>Rflp analysis</term>
<term>Rhodopsin</term>
<term>Sampling sites</term>
<term>Second marine form</term>
<term>Sequence analysis</term>
<term>Support values</term>
<term>Trabelsi</term>
</keywords>
<keywords scheme="Wicri" type="topic" xml:lang="fr"><term>Biologie</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Genetic differentiation and phylogenetic relationships of big‐scale sand smelt Atherina boyeri specimens from 23 sampling sites in Greece and one from a lake in Turkey were investigated. A total of 2180 base pairs (bp) corresponding to the partial sequence of the mitochondrial gene cytochrome oxidase I (coI), cytochrome b (cytb) and control region, as well as of the nuclear protein‐coding gene rhodopsin (rh), were determined for the 143 specimens studied. Phylogenetic analysis of each gene segment separately and of the combined dataset revealed the existence of three different and well divergent lineages in Greece. The first corresponds to the lagoon form, in which a clear distinction between the Aegean and Ionian Sea was observed. The other two correspond to the punctuated and non‐punctuated marine forms that have been previously reported. The fact that in the present study a population without black spots on the flanks is clustered with the punctuated form and vice versa, however, suggests that differences in colour pattern do not seem to be a sufficient marker to discriminate the two marine forms. In contrast, the presence of a different length insertion between transfer RNA (tRNA) glutamic acid (tRNAglu) and cytb genes in the lagoon and in one of the two forms of marine populations, and its absence from the rest marine‐form specimens confirms that this character is conserved and capable to be used for distinguishing the different forms. Even though the divergence values among the different forms were high, their phylogenetic relationships were not able to be resolved.</div>
</front>
</TEI>
<affiliations><list><country><li>Grèce</li>
</country>
</list>
<tree><country name="Grèce"><noRegion><name sortKey="Kraitsek, S" sort="Kraitsek, S" uniqKey="Kraitsek S" first="S." last="Kraitsek">S. Kraitsek</name>
</noRegion>
<name sortKey="Kilias, G" sort="Kilias, G" uniqKey="Kilias G" first="G." last="Kilias">G. Kilias</name>
<name sortKey="Kilias, G" sort="Kilias, G" uniqKey="Kilias G" first="G." last="Kilias">G. Kilias</name>
<name sortKey="Klossa Ilia, E" sort="Klossa Ilia, E" uniqKey="Klossa Ilia E" first="E." last="Klossa-Kilia">E. Klossa-Kilia</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Wicri/Terre/explor/NissirosV1/Data/Main/Exploration

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000035 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000035 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Wicri/Terre
   |area=    NissirosV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     ISTEX:689E2E59FEC96D142FC176233C98A79CCE3D06BA
   |texte=   Nuclear and mitochondrial phylogenetic analysis of big‐scale sand smelt Atherina boyeri complex in Greece
}}

This area was generated with Dilib version V0.6.33.
Data generation: Tue Jan 16 00:18:27 2018. Site generation: Mon Feb 1 22:09:13 2021

	Serveur d'exploration Nissiros
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur d'exploration Nissiros

Nuclear and mitochondrial phylogenetic analysis of big‐scale sand smelt Atherina boyeri complex in Greece

Nuclear and mitochondrial phylogenetic analysis of big‐scale sand smelt Atherina boyeri complex in Greece

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri